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stomics stereo seq t chips  (Complete Genomics Inc)


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    Complete Genomics Inc stomics stereo seq t chips
    Stomics Stereo Seq T Chips, supplied by Complete Genomics Inc, used in various techniques. Bioz Stars score: 99/100, based on 495 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/stomics+stereo+seq+chips/Stereo-seq+Transcriptomics+Set+for+FFPE/10__1038_slash_s41467___026___78051___5-460-4-4
    Average 99 stars, based on 495 article reviews
    stomics stereo seq t chips - by Bioz Stars, 2026-11
    99/100 stars

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    Related Articles

    Spatial Transcriptomics:

    Article Title: YAP disrupts bile acid homeostasis to drive cancer-associated cachexia
    Article Snippet: Zebrafish were euthanised using tricaine and embedded in optimal cutting temperature (OCT, [4583, Tissue-Tek]) in tissue moulds, then snap frozen.Zebrafish were euthanised using tricaine and embedded in optimal cutting temperature (OCT, [4583, Tissue-Tek]) in tissue moulds, then snap frozen.. Frozen tissue blocks were stored at −80 °C and cryosectioned at 10 μm onto STOmics Stereo-seq chips (V1.1; BGI Research).. Adjacent sections were stained with H&E.Adjacent sections were stained with H&E.

    Article Title: Spatial transcriptomics identifies distinct domains regulating yield-related traits of the wheat ear
    Article Snippet: To investigate cell differentiation and cell fate determine that associate with spikelet development in wheat, we performed spatial transcriptomic profiling for inflorescences at the double ridge and lemma primordium stages that mark the beginning and completion of spikelet initiation .To investigate cell differentiation and cell fate determine that associate with spikelet development in wheat, we performed spatial transcriptomic profiling for inflorescences at the double ridge and lemma primordium stages that mark the beginning and completion of spikelet initiation .. Developing spikes from the elite cultivar Mace were flash-frozen in optimal cutting temperature resin, sectioned longitudinally at 12 μm, and mounted onto 1 cm x 1 cm STOMics Stereo-seq chips.. These sections were subjected to a workflow that included nuclei and cell wall staining, analysis of tissue integrity, tissue permeabilization, cDNA synthesis, library generation and sequencing, in preparation for the downstream analyses ( ).These sections were subjected to a workflow that included nuclei and cell wall staining, analysis of tissue integrity, tissue permeabilization, cDNA synthesis, library generation and sequencing, in preparation for the downstream analyses ( ).

    Staining:

    Article Title: YAP disrupts bile acid homeostasis to drive cancer-associated cachexia
    Article Snippet: Zebrafish were euthanised using tricaine and embedded in optimal cutting temperature (OCT, [4583, Tissue-Tek]) in tissue moulds, then snap frozen.Zebrafish were euthanised using tricaine and embedded in optimal cutting temperature (OCT, [4583, Tissue-Tek]) in tissue moulds, then snap frozen.. Frozen tissue blocks were stored at −80 °C and cryosectioned at 10 μm onto STOmics Stereo-seq chips (V1.1; BGI Research).. Adjacent sections were stained with H&E.Adjacent sections were stained with H&E.

    Article Title: Spatial transcriptomics identifies distinct domains regulating yield-related traits of the wheat ear
    Article Snippet: To investigate cell differentiation and cell fate determine that associate with spikelet development in wheat, we performed spatial transcriptomic profiling for inflorescences at the double ridge and lemma primordium stages that mark the beginning and completion of spikelet initiation .To investigate cell differentiation and cell fate determine that associate with spikelet development in wheat, we performed spatial transcriptomic profiling for inflorescences at the double ridge and lemma primordium stages that mark the beginning and completion of spikelet initiation .. Developing spikes from the elite cultivar Mace were flash-frozen in optimal cutting temperature resin, sectioned longitudinally at 12 μm, and mounted onto 1 cm x 1 cm STOMics Stereo-seq chips.. These sections were subjected to a workflow that included nuclei and cell wall staining, analysis of tissue integrity, tissue permeabilization, cDNA synthesis, library generation and sequencing, in preparation for the downstream analyses ( ).These sections were subjected to a workflow that included nuclei and cell wall staining, analysis of tissue integrity, tissue permeabilization, cDNA synthesis, library generation and sequencing, in preparation for the downstream analyses ( ).

    Marker:

    Article Title: YAP disrupts bile acid homeostasis to drive cancer-associated cachexia
    Article Snippet: Zebrafish were euthanised using tricaine and embedded in optimal cutting temperature (OCT, [4583, Tissue-Tek]) in tissue moulds, then snap frozen.Zebrafish were euthanised using tricaine and embedded in optimal cutting temperature (OCT, [4583, Tissue-Tek]) in tissue moulds, then snap frozen.. Frozen tissue blocks were stored at −80 °C and cryosectioned at 10 μm onto STOmics Stereo-seq chips (V1.1; BGI Research).. Adjacent sections were stained with H&E.Adjacent sections were stained with H&E.

    Article Title: Spatial transcriptomics identifies distinct domains regulating yield-related traits of the wheat ear
    Article Snippet: To investigate cell differentiation and cell fate determine that associate with spikelet development in wheat, we performed spatial transcriptomic profiling for inflorescences at the double ridge and lemma primordium stages that mark the beginning and completion of spikelet initiation .To investigate cell differentiation and cell fate determine that associate with spikelet development in wheat, we performed spatial transcriptomic profiling for inflorescences at the double ridge and lemma primordium stages that mark the beginning and completion of spikelet initiation .. Developing spikes from the elite cultivar Mace were flash-frozen in optimal cutting temperature resin, sectioned longitudinally at 12 μm, and mounted onto 1 cm x 1 cm STOMics Stereo-seq chips.. These sections were subjected to a workflow that included nuclei and cell wall staining, analysis of tissue integrity, tissue permeabilization, cDNA synthesis, library generation and sequencing, in preparation for the downstream analyses ( ).These sections were subjected to a workflow that included nuclei and cell wall staining, analysis of tissue integrity, tissue permeabilization, cDNA synthesis, library generation and sequencing, in preparation for the downstream analyses ( ).

    Expressing:

    Article Title: YAP disrupts bile acid homeostasis to drive cancer-associated cachexia
    Article Snippet: Zebrafish were euthanised using tricaine and embedded in optimal cutting temperature (OCT, [4583, Tissue-Tek]) in tissue moulds, then snap frozen.Zebrafish were euthanised using tricaine and embedded in optimal cutting temperature (OCT, [4583, Tissue-Tek]) in tissue moulds, then snap frozen.. Frozen tissue blocks were stored at −80 °C and cryosectioned at 10 μm onto STOmics Stereo-seq chips (V1.1; BGI Research).. Adjacent sections were stained with H&E.Adjacent sections were stained with H&E.

    Article Title: Spatial transcriptomics identifies distinct domains regulating yield-related traits of the wheat ear
    Article Snippet: To investigate cell differentiation and cell fate determine that associate with spikelet development in wheat, we performed spatial transcriptomic profiling for inflorescences at the double ridge and lemma primordium stages that mark the beginning and completion of spikelet initiation .To investigate cell differentiation and cell fate determine that associate with spikelet development in wheat, we performed spatial transcriptomic profiling for inflorescences at the double ridge and lemma primordium stages that mark the beginning and completion of spikelet initiation .. Developing spikes from the elite cultivar Mace were flash-frozen in optimal cutting temperature resin, sectioned longitudinally at 12 μm, and mounted onto 1 cm x 1 cm STOMics Stereo-seq chips.. These sections were subjected to a workflow that included nuclei and cell wall staining, analysis of tissue integrity, tissue permeabilization, cDNA synthesis, library generation and sequencing, in preparation for the downstream analyses ( ).These sections were subjected to a workflow that included nuclei and cell wall staining, analysis of tissue integrity, tissue permeabilization, cDNA synthesis, library generation and sequencing, in preparation for the downstream analyses ( ).

    Derivative Assay:

    Article Title: YAP disrupts bile acid homeostasis to drive cancer-associated cachexia
    Article Snippet: Zebrafish were euthanised using tricaine and embedded in optimal cutting temperature (OCT, [4583, Tissue-Tek]) in tissue moulds, then snap frozen.Zebrafish were euthanised using tricaine and embedded in optimal cutting temperature (OCT, [4583, Tissue-Tek]) in tissue moulds, then snap frozen.. Frozen tissue blocks were stored at −80 °C and cryosectioned at 10 μm onto STOmics Stereo-seq chips (V1.1; BGI Research).. Adjacent sections were stained with H&E.Adjacent sections were stained with H&E.

    Article Title: Spatial transcriptomics identifies distinct domains regulating yield-related traits of the wheat ear
    Article Snippet: To investigate cell differentiation and cell fate determine that associate with spikelet development in wheat, we performed spatial transcriptomic profiling for inflorescences at the double ridge and lemma primordium stages that mark the beginning and completion of spikelet initiation .To investigate cell differentiation and cell fate determine that associate with spikelet development in wheat, we performed spatial transcriptomic profiling for inflorescences at the double ridge and lemma primordium stages that mark the beginning and completion of spikelet initiation .. Developing spikes from the elite cultivar Mace were flash-frozen in optimal cutting temperature resin, sectioned longitudinally at 12 μm, and mounted onto 1 cm x 1 cm STOMics Stereo-seq chips.. These sections were subjected to a workflow that included nuclei and cell wall staining, analysis of tissue integrity, tissue permeabilization, cDNA synthesis, library generation and sequencing, in preparation for the downstream analyses ( ).These sections were subjected to a workflow that included nuclei and cell wall staining, analysis of tissue integrity, tissue permeabilization, cDNA synthesis, library generation and sequencing, in preparation for the downstream analyses ( ).

    Immunofluorescence:

    Article Title: YAP disrupts bile acid homeostasis to drive cancer-associated cachexia
    Article Snippet: Zebrafish were euthanised using tricaine and embedded in optimal cutting temperature (OCT, [4583, Tissue-Tek]) in tissue moulds, then snap frozen.Zebrafish were euthanised using tricaine and embedded in optimal cutting temperature (OCT, [4583, Tissue-Tek]) in tissue moulds, then snap frozen.. Frozen tissue blocks were stored at −80 °C and cryosectioned at 10 μm onto STOmics Stereo-seq chips (V1.1; BGI Research).. Adjacent sections were stained with H&E.Adjacent sections were stained with H&E.

    Article Title: Spatial transcriptomics identifies distinct domains regulating yield-related traits of the wheat ear
    Article Snippet: To investigate cell differentiation and cell fate determine that associate with spikelet development in wheat, we performed spatial transcriptomic profiling for inflorescences at the double ridge and lemma primordium stages that mark the beginning and completion of spikelet initiation .To investigate cell differentiation and cell fate determine that associate with spikelet development in wheat, we performed spatial transcriptomic profiling for inflorescences at the double ridge and lemma primordium stages that mark the beginning and completion of spikelet initiation .. Developing spikes from the elite cultivar Mace were flash-frozen in optimal cutting temperature resin, sectioned longitudinally at 12 μm, and mounted onto 1 cm x 1 cm STOMics Stereo-seq chips.. These sections were subjected to a workflow that included nuclei and cell wall staining, analysis of tissue integrity, tissue permeabilization, cDNA synthesis, library generation and sequencing, in preparation for the downstream analyses ( ).These sections were subjected to a workflow that included nuclei and cell wall staining, analysis of tissue integrity, tissue permeabilization, cDNA synthesis, library generation and sequencing, in preparation for the downstream analyses ( ).



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    a , Schematic of the spatial transcriptomics (SRT) workflow. Cryosections were obtained from the indicated anatomical region (highlighted in schematic). Adjacent sister sections were stained with H&E, and sections for SRT were processed with <t>BGI</t> <t>Stereo-seq</t> technology. b , Spatial feature plot showing spot-level transcriptomic clustering of WT and PY-TB zebrafish samples. Clusters were identified by Seurat using principal component analysis and graph-based clustering of transcriptomic neighbourhoods. c , Integrated UMAP of all spatial transcriptomic spots coloured by Seurat-defined cluster identity. Cluster annotation was guided by regionally enriched marker genes and tissue interpretation using Zebrahub. d , UMAP and spatial feature plots highlighting hepatocyte-enriched spots defined by expression of hepatocyte marker, fabp10a , above the 75th percentile. Cells are grouped by sample: WT hepatocytes (blue) and PY-TB hepatocytes (red). e , Volcano plot of differentially expressed genes (DEGs) between PY-TB hepatocytes and WT hepatocytes, both defined by fabp10a expression in the spatial data. f , Spatial projection of cholangiocyte marker, anxa4, expression, visualised over spatial coordinates of the tissue section. g-i , Gene set enrichment analysis (GSEA) plots of selected pathways enriched in PY-TB hepatocytes versus WT, derived from DEGs identified in the SRT dataset. j , H&E and immunofluorescence staining of liver sections of WT and PY-TB fish at 21 dpf. Nuclei are marked with DAPI (cyan), hepatocytes with GFP (green), and cholangiocytes with ANXA4 (magenta). White arrow represents GFP+/ANXA4+ bi-lineage cells. Scale bar, 100 μm.
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    Image Search Results


    a , Schematic of the spatial transcriptomics (SRT) workflow. Cryosections were obtained from the indicated anatomical region (highlighted in schematic). Adjacent sister sections were stained with H&E, and sections for SRT were processed with BGI Stereo-seq technology. b , Spatial feature plot showing spot-level transcriptomic clustering of WT and PY-TB zebrafish samples. Clusters were identified by Seurat using principal component analysis and graph-based clustering of transcriptomic neighbourhoods. c , Integrated UMAP of all spatial transcriptomic spots coloured by Seurat-defined cluster identity. Cluster annotation was guided by regionally enriched marker genes and tissue interpretation using Zebrahub. d , UMAP and spatial feature plots highlighting hepatocyte-enriched spots defined by expression of hepatocyte marker, fabp10a , above the 75th percentile. Cells are grouped by sample: WT hepatocytes (blue) and PY-TB hepatocytes (red). e , Volcano plot of differentially expressed genes (DEGs) between PY-TB hepatocytes and WT hepatocytes, both defined by fabp10a expression in the spatial data. f , Spatial projection of cholangiocyte marker, anxa4, expression, visualised over spatial coordinates of the tissue section. g-i , Gene set enrichment analysis (GSEA) plots of selected pathways enriched in PY-TB hepatocytes versus WT, derived from DEGs identified in the SRT dataset. j , H&E and immunofluorescence staining of liver sections of WT and PY-TB fish at 21 dpf. Nuclei are marked with DAPI (cyan), hepatocytes with GFP (green), and cholangiocytes with ANXA4 (magenta). White arrow represents GFP+/ANXA4+ bi-lineage cells. Scale bar, 100 μm.

    Journal: bioRxiv

    Article Title: YAP disrupts bile acid homeostasis to drive cancer-associated cachexia

    doi: 10.64898/2026.02.01.702698

    Figure Lengend Snippet: a , Schematic of the spatial transcriptomics (SRT) workflow. Cryosections were obtained from the indicated anatomical region (highlighted in schematic). Adjacent sister sections were stained with H&E, and sections for SRT were processed with BGI Stereo-seq technology. b , Spatial feature plot showing spot-level transcriptomic clustering of WT and PY-TB zebrafish samples. Clusters were identified by Seurat using principal component analysis and graph-based clustering of transcriptomic neighbourhoods. c , Integrated UMAP of all spatial transcriptomic spots coloured by Seurat-defined cluster identity. Cluster annotation was guided by regionally enriched marker genes and tissue interpretation using Zebrahub. d , UMAP and spatial feature plots highlighting hepatocyte-enriched spots defined by expression of hepatocyte marker, fabp10a , above the 75th percentile. Cells are grouped by sample: WT hepatocytes (blue) and PY-TB hepatocytes (red). e , Volcano plot of differentially expressed genes (DEGs) between PY-TB hepatocytes and WT hepatocytes, both defined by fabp10a expression in the spatial data. f , Spatial projection of cholangiocyte marker, anxa4, expression, visualised over spatial coordinates of the tissue section. g-i , Gene set enrichment analysis (GSEA) plots of selected pathways enriched in PY-TB hepatocytes versus WT, derived from DEGs identified in the SRT dataset. j , H&E and immunofluorescence staining of liver sections of WT and PY-TB fish at 21 dpf. Nuclei are marked with DAPI (cyan), hepatocytes with GFP (green), and cholangiocytes with ANXA4 (magenta). White arrow represents GFP+/ANXA4+ bi-lineage cells. Scale bar, 100 μm.

    Article Snippet: Frozen tissue blocks were stored at −80 °C and cryosectioned at 10 μm onto STOmics Stereo-seq chips (V1.1; BGI Research).

    Techniques: Spatial Transcriptomics, Staining, Marker, Expressing, Derivative Assay, Immunofluorescence